Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs17288270 chr8:74271939 C/A 1.11E-16 171 25.4 26.57 3.17 KM Plot
PCPG rs17297991 chr10:131970634 T/G 0 177 25.6 24.47 3.17 KM Plot
PCPG rs17303178 chr12:12485351 G/A 2.1E-8 171 25.17 28.47 7.2 KM Plot
PCPG rs17343556 chr7:105151272 C/T 5.56E-5 177 20.17 29.43 2.28 KM Plot
PCPG rs17345863 chr16:71523261 C/T 0 177 24.52 29.02 3.17 KM Plot
PCPG rs17347255 chr16:71587225 C/T 0.000141 173 24.85 31.47 15.82 KM Plot
PCPG rs1736196 chr19:2868662 G/A 0.000389 170 25.67 16.97 116.37 KM Plot
PCPG rs17363814 chr19:4844633 A/G 3.01E-6 178 16.23 26.57 25.4 KM Plot
PCPG rs1741738 chr6:26401252 A/G 1.11E-16 174 24.7 30.25 3.17 KM Plot
PCPG rs17456400 chr10:69849664 T/G 0 172 25.77 21.45 2.28 KM Plot
PCPG rs17457340 chr20:10640042 T/C 0.000173 177 24.23 28.52 14.28 KM Plot
PCPG rs1748335 chr10:26932699 C/G 0.000146 178 26.27 22.63 24.53 KM Plot
PCPG rs17508783 chr11:43419910 A/G 0.000209 178 25.08 25.53 23.73 KM Plot
PCPG rs17510931 chr2:118697457 C/A 1.6E-5 178 25.17 30.93 11.65 KM Plot
PCPG rs17528296 chr2:118855807 C/T 2.32E-5 174 25 25.97 11.65 KM Plot